How to get from El Nido to Manila
Why visit Manila?
Manila is the capital of the Philippines — an old city often disregarded by travellers who use it only as a gateway to the country’s more visually appealing islands. But if you have an extra day in your itinerary, we think Manila’s colourful history is a great way to kick off your trip.
Explore the walled city of Intramuros, Fort Santiago, Manila Cathedral and San Agustin Church — all of which were first built in the late 1500s. Art and anthropology also attract many locals to Manila. You will find here the National Museum, a complex of three museum buildings that tell the story of the Filipinos.
What are the 5 ways to travel from El Nido to Manila?
There are 5 ways to travel the 623 kilometre (387 miles) distance from El Nido to Manila. You can choose between the direct flight, direct ferry, minivan + flight via Puerto Princesa, minivan + flight via San Vicente* and indirect ferry via Coron. The journey takes 2 hours 20 minutes to 1 day 6 hours and the quickest way is by direct flight. If you're on a budget, the cheapest option is by direct ferry with tickets starting at 1,840 PHP ($31).
Where to stay in Manila?
Still looking for accommodation? Don't forget to check out our favourite places to stay in Manila at the bottom of this page.
El Nido to Manila by Minivan + Flight via Puerto Princesa
The most popular option to travel from El Nido to Manila is a combination of a 5 to 5.5-hour minivan ride to Puerto Princesa and a 1.5-hour flight to Manila.
Even though there are direct flights from El Nido to Manila, more airlines operate from Puerto Princesa to Manila and fares are cheaper for this route. In fact, combined fares for this indirect flight option are less than half of the direct flight fare from El Nido to Manila.
Step 1: El Nido to Puerto Princesa by Minivan
From El Nido Transport Terminal, there are multiple minivans bound for Puerto Princesa. Fortwally, Eulen Joy Express, and Island View Travel vans head straight to Puerto Princesa Airport, so you won’t need any additional rides.
The van ride can take 5h with fares from 715 PHP ($12).
We highly suggest booking online in advance via BookAway if you have already booked your flight from Puerto Princesa to Manila. This way, you can plan your trip from El Nido to Puerto Princesa Airport accordingly without missing your flight.
Note that there are reviews about the lack of legroom and the van not leaving on time. Unfortunately, these are common occurrences when taking a van in the Philippines.
Read more details in our article about going from El Nido to Puerto Princesa.
Step 2: Puerto Princesa to Manila by Flight
The second leg of your trip is a flight from Puerto Princesa to Manila, which takes around 1h 30m — same as flying direct from El Nido. AirAsia, Cebu Pacific, and Philippine Airlines all fly this route, with ticket prices starting at 1,350 PHP ($22.50).
Airfares tend to get more expensive if you book shortly before the flight — especially during busy seasons — so it’s a good idea to book early.
TIP: Cebu Pacific and AirAsia offer many promotions annually. Keep an eye out for these promotions to book a cheaper flight for this route!
Step 3: Manila Airport to the City Centre
Flights from Puerto Princesa to Manila land at Ninoy Aquino International Airport (NAIA) in Pasay City. Manila Airport has 4 separate terminals with different entry points. AirAsia and Philippine Airlines flights land at NAIA Terminal 2, while Cebu Pacific lands at Terminal 3. These terminals are about 10 minutes apart.
The easiest way to get from Manila Airport to anywhere in Metro Manila is by Grab car. Rates start from 230 PHP ($3.90) from Terminal 3 and 370 PHP ($6.20) from Terminal 2, depending on where you’re heading in the city. Taxis are also available at the airport, just make sure you travel with an accredited taxi!
If you want to pre-book your transfer, Klook offers private rides with prices from 1,170 PHP ($19.50) for a 4-seater.
Alternatively, UBE Express operates point-to-point buses from several destinations across Metro Manila to Ninoy Aquino International Airport. Here are the ticket prices:
-
- 150 PHP ($2.50) – to Pasay, Parañaque and Robinsons Manila
- 200 PHP ($3.30) – to Araneta City and Alabang
Check out our guide for Manila Airport for more details.
El Nido to Manila by Direct Flight
The direct flight is the fastest option from El Nido to Manila, but it is also the most expensive. It’s ideal if you’re short on time and don’t mind spending a bit more.
AirSWIFT and Cebu Pacific offer direct flights on this route. Including airport transfers, the total travel time comes to around 2 hours 20 minutes to 2 hours 50 minutes.
TIP: If you decide to travel by plane, please consider including a carbon compensation fee to reduce your impact on the environment.
Step 1: El Nido Town to El Nido Airport by Tuk-Tuk
Flights depart from El Nido Airport, which is only 5 km away from the town centre. A tricycle ride from your hotel to the airport costs 300 PHP ($5) for 2 passengers with luggage.
You can also check with your hotel if they offer transport to the airport.
Step 2: El Nido Airport to Manila
AirSWIFT and Cebu Pacific run several direct flights from El Nido to Manila every day. The earliest flight takes off at 07:40, and the last one leaves around 20:15. The journey takes about 1h 30m
One-way tickets start at 6,900 PHP ($115), but prices tend to climb as your travel date gets closer. If you want to lock in the best deal, it’s a good idea to book early.
The direct flight from El Nido to Manila lands at Ninoy Aquino International Airport (NAIA) in Pasay City. AirSWIFT flights arrive at Terminal 2, while Cebu Pacific (5J) lands at Terminal 3.
Step 3: Manila Airport to the City Centre
The easiest way to get around after landing at Manila Airport is by Grab car. Just book through the app, and you’re good to go. Fares start at 230 PHP ($3.90) from Terminal 3 and 370 PHP ($6.20) from Terminal 2, depending on your destination.
Taxis are also available, but make sure to take an accredited taxi to avoid any issues.
If you want everything sorted before you arrive, you can pre-book a private transfer with Klook. Prices start at 1,170 PHP ($19.50) for a 4-seater car.
Check out our guide for Manila Airport for more details.
El Nido to Manila by Indirect Ferry via Coron
Travelling by ferry from El Nido to Manila is an option, if you’re not in a hurry. You can take an indirect ferry from El Nido to Manila that takes around 16 hours 30 minutes.
You’ll first need to take a fast ferry from El Nido to Coron Port, and then another ferry from Coron to Manila North Harbour Pier 4. This is a good option if you want to explore the beautiful island of Coron.
Step 1: El Nido to Coron by Fast Ferry
There are four fast ferry companies operating between El Nido and Coron.
Phimal offers the cheapest ferry tickets, with prices starting at 2,660 PHP ($44.50). But it only runs on select days — Tuesday, Thursday, and Saturday mornings.
Other operators like Montenegro Shipping Lines, Jomalia Shipping, and Atienza Interisland Ferries are available daily. Their tickets are pricier, though, ranging from 2,760 PHP ($46) to 3,140 PHP ($53).
Travel time is about 3h 30m - 3h 40m.
For more information, you can visit our page on El Nido to Coron.
Step 2: Coron to Manila by Ferry
2Go Travel is the main operator for ferries from Coron to Manila. It is one of the most famous ferry companies in the Philippines, so it is often the first choice for sea travel. There’s a catch, though, the 2Go ferry from Coron to Manila operates only on Sundays.
Travel time takes 13h to Manila North Harbour with fares starting from 3,110 PHP ($52). But this price still depends on how early you book and on the ticket class you buy. You’ve also got the option to book directly on their official website.
Atienza Interisland Ferries Inc. also operates a passenger-cargo ferry on this route, usually sailing 2 to 3 times a week. The schedule can vary each month, so it’s best to check their Facebook page for the latest updates.
Tickets start at 1,840 PHP ($31) for economy class, with other options available at higher prices. The journey takes around 18 hours. You can book your tickets online through BookAway or message them on Viber or WhatsApp.
Want more details? Read how to go from Coron to Manila.
El Nido to Manila by Direct Ferry
If you’re after a direct ferry trip from El Nido to Manila, Atienza Interisland Ferries is your only option.
The company has two departures a week, typically on Tuesdays and Fridays. Schedules can change, so we recommend checking their Facebook page for the latest updates.
Economy class tickets cost 1,840 PHP ($31), while an airconditioned tourist class ticket costs 2,060 PHP ($34.50).
Departure and arrival ports
All ferries leave from El Nido Ferry Terminal and arrive at Baseco Port Area in Tondo. This pier is accessible to other cities in Metro Manila via taxi or Grab, with fares starting at about 250 PHP ($4.20).
Ferry schedule from El Nido to Manila
- 24/7 customer support
- 24/7 customer support
- 24/7 customer support
- 24/7 customer support
You can book Atienza ferry tickets online on BookAway. You can also grab your tickets by messaging them on Viber or WhatsApp.
El Nido to Manila by Minivan + Flight via San Vicente*
The last time we checked (June 2025), there were no available flights from San Vicente to Manila. Please click the link provided to see if anything has changed.
Aside from El Nido and Puerto Princesa, San Vicente has a small airport where you can take a flight to Manila. This town is located 2 to 3 hours away from El Nido, so travel time is shorter compared to taking a flight via Puerto Princesa.
San Vicente is a budding tourist destination in Palawan. You’ll find here the longest white sand beach in the Philippines, which makes for a good side trip opportunity before heading to Manila.
This option includes a 2-hour minivan ride from El Nido to San Vicente and a 1-hour-45-minute flight with Sunlight Air from San Vicente to Manila.
Step 1: El Nido to San Vicente by Minivan
Since San Vicente is a small town with only two flights a week at its airport, public transportation is not regularly available.
For this reason, Sunlight Air, the sole airline operating between San Vicente and Manila, offers minivan transfers for its passengers. Tickets cost 785 PHP ($13.10) one way, and you can book your seat through their Facebook page.
The minivan will pick you up from El Nido Terminal and drop you off at San Vicente Airport in time for your flight to Manila.
We suggest booking your seat with Sunlight Air, especially since the flight is early in the morning. If by public transportation, you will need to take a bus or a minivan to Roxas town or junction and then ride an e-tricycle (electric tuk-tuk) to San Vicente Airport.
Step 2: San Vicente to Manila by Flight
Sunlight Air offers flights between San Vicente and Manila twice a week. The flight departs San Vicente at 07:00 on Sundays and Thursdays.
Airfares start from 3,000 PHP ($50), but you can score cheaper tickets during seat sales.
It takes around 1h 45m from San Vicente to Manila by flight.
Best places to stay in Manila
Manila is a bustling metropolitan city that can be slightly overwhelming at first. Not just because of the busy streets and towering skyscrapers, but also because of the number of hotels to pick from. There are a lot!
No matter your price range, we’ve found some great places to stay in the best locations so you don’t have to do that research.
Before you start reading about our favourite stays, it’s good to know a bit about the best areas to stay in Manila. That way, you’re picking the best accommodation in the area that’s right for you.
-
- Makati is our favourite area to stay in Manila, and where most of our favourite stays are. It’s one of the most upscale areas in Manila and is known for its shopping malls, restaurants, and nightlife.
-
- Bonifacio Global City (BGC) is a newer development in Manila and is known for its modern architecture, restaurants and shopping centres.
-
- Malate is a lively area known for its bars, nightclubs and restaurants. It’s also close to several tourist attractions, such as Rizal Park and Intramuros.
Somerset Central Salcedo Makati - Treating Yourself
Area: Makati City centre — approx. 10-minute walk to shopping malls and business centre
As soon as you step into Somerset Central, you forget about the hustle and bustle going on outside the doors. Inside the hotel you’re met with luxury, relaxation and a chance to rejuvenate yourself in the gym or outdoor pool.
The grandeur of the hotel continues in the rooms, decorated in a stylish and modern design. The highlight of the room are the beds. They’re huge and super comfortable, guaranteeing you a great night’s sleep.
- Outdoor swimming pool
- Gym
- A la carte restaurant
- Continental breakfast included
Double rooms start from $50 per night
Hotel 101 Manila - Mid Range
Area: Along Mall of Asia complex — approx. 10-minute drive to shopping malls and airport
Hotel 101 Manila has everything you could ask for from a city hotel. It has a refreshing outdoor pool, a delicious on-site restaurant and it’s close to the airport — perfect if you’re flying in or out of Manila.
The rooms are large, comfortable and exceptionally clean. With their incredible hospitality, the staff make you feel like you’re staying in a 5-star hotel.
- Outdoor swimming pool
- On-site restaurant
- Amazing staff
- Great and convenient location
Double rooms cost $30-$50 per night
Hop Inn Hotel Makati Avenue - Budget Friendly
Area: Makati City centre — approx. 5-minute drive to nearest shopping mall
Only passing through Manila? Hop Inn Hotel is perfect for those spending just a few nights in the busy city. It’s clean, modern and has all of the basic amenities that you could possibly need.
Modern minimalism would be a good way to describe this place. Plus you won’t be spending too much time in your room as you’re located in Makati, one of the best neighbourhoods in Manila.
- Clean and modern rooms
- Great location
- Air conditioning
- Helpful staff
Double rooms cost $15-$30 per night
Rounding it up
We hope this guide was helpful in planning how to get from El Nido to Manila. If there's anything else you're wondering about, drop us a comment and we'll do our best to answer you within a few days.
PS: If you've recently travelled this route, share your experience with fellow travellers and help us improve this post. Thanks for helping out our travel community!
Frequently Asked Questions about El Nido to Manila
What is the distance from El Nido to Manila?
The distance from El Nido to Manila is 623 kilometre (387 miles).
What is the fastest way to get from El Nido to Manila?
The fastest way to get from El Nido to Manila is by direct flight and takes 2 hours 20 minutes.
What is the cheapest way to get from El Nido to Manila?
The cheapest way to get from El Nido to Manila is by direct ferry with ticket costs starting from 1,840 PHP ($31).
Abby is a writer who finds joy in mountains, beaches, and road trips. She considers her solo backpacking trip to the rice terraces of Bontoc one of the most fulfilling moments in her life. She’s loyal to the islands of her home country, the Philippines, but Thailand’s beaches also have a special place in her heart.
Faye is a writer and full-time mom. She loves planning trips to the beach, tasting new cuisines and discovering gems in the Philippines. But if she had to choose, London is her favourite place in the world and she can't wait to travel there again with her hubby and baby!
Ela is a storyteller, content producer, solo traveller and a mermaid-in-training. When she’s not in front of her laptop, you will find her barefoot and living her best tan on some island in the Philippines… Or exploring the depths of its seas as a budding freediver. An island girl at heart, she’ll be happy anywhere there is sea, sand, sun and coffee.
